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sali  (New England Biolabs)


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    Structured Review

    New England Biolabs sali
    Sali, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 98/100, based on 538 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sali+hf/SalI-HF/pm41876484-461-33-53
    Average 98 stars, based on 538 article reviews
    sali - by Bioz Stars, 2026-09
    98/100 stars

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    Related Articles

    Amplification:

    Article Title: Single-cell CRISPR activation screens in primary B cells discover gene regulatory mechanisms for hundreds of autoimmune risk loci
    Article Snippet: The blasticidin resistance gene in LentiSAMv2 (a gift from Feng Zhang; Addgene #75112 ( )) was replaced with Cherry Fluorescent Protein (ChFP) by digesting LentiSAMv2 with BsrGI-HF (New England Biolabs, NEB) and EcoRI-HF (NEB) and replaced with the ChFP gene amplified from pLVX-EF1α-IRES-mCherry vector (Takara Bio 631987) to generate LentiSAMv2-ChFP . .. The subsequent dCas9-VP64-T2A-ChFP fragment was amplified and cloned into retroviral vector MSCV-BCL6-t2A-BCL2 (Addgene #135305; ( , )) digested with XhoI (NEB) and SalI-HF (NEB) to replace the BCL6-T2A-BCL2-IRES-CD2 fragment and generate MSCV-dCas9-VP64-ChFP . .. Similarly, MCP-p65-HSF1-T2A-GFP was amplified from the MS2-P65-HSF1_GFP vector (a gift from Feng Zhang; Addgene #61423 ( )) and cloned into MSCV-BCL6-t2A-BCL2 backbone to generate MSCV-MCP-p65-HSF1-GFP .

    Clone Assay:

    Article Title: Single-cell CRISPR activation screens in primary B cells discover gene regulatory mechanisms for hundreds of autoimmune risk loci
    Article Snippet: The blasticidin resistance gene in LentiSAMv2 (a gift from Feng Zhang; Addgene #75112 ( )) was replaced with Cherry Fluorescent Protein (ChFP) by digesting LentiSAMv2 with BsrGI-HF (New England Biolabs, NEB) and EcoRI-HF (NEB) and replaced with the ChFP gene amplified from pLVX-EF1α-IRES-mCherry vector (Takara Bio 631987) to generate LentiSAMv2-ChFP . .. The subsequent dCas9-VP64-T2A-ChFP fragment was amplified and cloned into retroviral vector MSCV-BCL6-t2A-BCL2 (Addgene #135305; ( , )) digested with XhoI (NEB) and SalI-HF (NEB) to replace the BCL6-T2A-BCL2-IRES-CD2 fragment and generate MSCV-dCas9-VP64-ChFP . .. Similarly, MCP-p65-HSF1-T2A-GFP was amplified from the MS2-P65-HSF1_GFP vector (a gift from Feng Zhang; Addgene #61423 ( )) and cloned into MSCV-BCL6-t2A-BCL2 backbone to generate MSCV-MCP-p65-HSF1-GFP .

    Retroviral:

    Article Title: Single-cell CRISPR activation screens in primary B cells discover gene regulatory mechanisms for hundreds of autoimmune risk loci
    Article Snippet: The blasticidin resistance gene in LentiSAMv2 (a gift from Feng Zhang; Addgene #75112 ( )) was replaced with Cherry Fluorescent Protein (ChFP) by digesting LentiSAMv2 with BsrGI-HF (New England Biolabs, NEB) and EcoRI-HF (NEB) and replaced with the ChFP gene amplified from pLVX-EF1α-IRES-mCherry vector (Takara Bio 631987) to generate LentiSAMv2-ChFP . .. The subsequent dCas9-VP64-T2A-ChFP fragment was amplified and cloned into retroviral vector MSCV-BCL6-t2A-BCL2 (Addgene #135305; ( , )) digested with XhoI (NEB) and SalI-HF (NEB) to replace the BCL6-T2A-BCL2-IRES-CD2 fragment and generate MSCV-dCas9-VP64-ChFP . .. Similarly, MCP-p65-HSF1-T2A-GFP was amplified from the MS2-P65-HSF1_GFP vector (a gift from Feng Zhang; Addgene #61423 ( )) and cloned into MSCV-BCL6-t2A-BCL2 backbone to generate MSCV-MCP-p65-HSF1-GFP .

    Expressing:

    Article Title: Functional effects of EpCAM N-glycosylation in MDA-MB-468 breast cancer cells.
    Article Snippet: Generation of stable cell lines HEK293T cells were transfected with pLentiCRISPRv229 with EpCAM guide RNA30 (Genscript, Piscataway, NJ, USA), lentiviral packaging plasmid psPAX2 (courtesy of Didier Trono, Addgene #12260, Watertown, MA, USA), and envelope plasmid PMD2.G (courtesy of Didier Trono, Addgene #12259) using Lipofectamine 3000 (Thermo Fisher Scientific #L3000-008) according to the manufacturer’s instructions. .. To generate the EpCAM overexpressing (OV) and mutEpCAM expressing plasmids, custom genes were produced by Thermo Fisher Scientific GeneArt and inserted into pLentiCMV-blast31 (courtesy of Eric Campeau & Paul Kaufman, Addgene #17486) using restriction enzyme cloning with XbaI (New England Biolabs #R0145S) and SalI-HF (New England Biolabs #R3138S) using NEB rCutSmart Buffer (New England Biolabs #B6004S). .. Fragments were isolated by agarose (VWR #490001-580) gel electrophoresis as described above and purified using QIAquick PCR & Gel Cleanup kit (Qiagen #28506).

    Produced:

    Article Title: Functional effects of EpCAM N-glycosylation in MDA-MB-468 breast cancer cells.
    Article Snippet: Generation of stable cell lines HEK293T cells were transfected with pLentiCRISPRv229 with EpCAM guide RNA30 (Genscript, Piscataway, NJ, USA), lentiviral packaging plasmid psPAX2 (courtesy of Didier Trono, Addgene #12260, Watertown, MA, USA), and envelope plasmid PMD2.G (courtesy of Didier Trono, Addgene #12259) using Lipofectamine 3000 (Thermo Fisher Scientific #L3000-008) according to the manufacturer’s instructions. .. To generate the EpCAM overexpressing (OV) and mutEpCAM expressing plasmids, custom genes were produced by Thermo Fisher Scientific GeneArt and inserted into pLentiCMV-blast31 (courtesy of Eric Campeau & Paul Kaufman, Addgene #17486) using restriction enzyme cloning with XbaI (New England Biolabs #R0145S) and SalI-HF (New England Biolabs #R3138S) using NEB rCutSmart Buffer (New England Biolabs #B6004S). .. Fragments were isolated by agarose (VWR #490001-580) gel electrophoresis as described above and purified using QIAquick PCR & Gel Cleanup kit (Qiagen #28506).

    Cloning:

    Article Title: Functional effects of EpCAM N-glycosylation in MDA-MB-468 breast cancer cells.
    Article Snippet: Generation of stable cell lines HEK293T cells were transfected with pLentiCRISPRv229 with EpCAM guide RNA30 (Genscript, Piscataway, NJ, USA), lentiviral packaging plasmid psPAX2 (courtesy of Didier Trono, Addgene #12260, Watertown, MA, USA), and envelope plasmid PMD2.G (courtesy of Didier Trono, Addgene #12259) using Lipofectamine 3000 (Thermo Fisher Scientific #L3000-008) according to the manufacturer’s instructions. .. To generate the EpCAM overexpressing (OV) and mutEpCAM expressing plasmids, custom genes were produced by Thermo Fisher Scientific GeneArt and inserted into pLentiCMV-blast31 (courtesy of Eric Campeau & Paul Kaufman, Addgene #17486) using restriction enzyme cloning with XbaI (New England Biolabs #R0145S) and SalI-HF (New England Biolabs #R3138S) using NEB rCutSmart Buffer (New England Biolabs #B6004S). .. Fragments were isolated by agarose (VWR #490001-580) gel electrophoresis as described above and purified using QIAquick PCR & Gel Cleanup kit (Qiagen #28506).

    other:

    Article Title: Functional effects of EpCAM N-glycosylation in MDA-MB-468 breast cancer cells
    Article Snippet: After puromycin selection and a round of cell sorting with an Aria IIu Cell Sorter the Johns Hopkins Ross Flow Cytometry Core Facility using an anti-EpCAM antibody conjugated to Alexa Fluor 647 (1:200 dilution, Santa Cruz Biotechnology #sc25308-AF647, Dallas, TX, USA), the EpCAM knockout (KO) remained unstable, showing EpCAM expression to slowly increase again over time, indicating a mixed EpCAM KO and WT cell population.

    Polymerase Chain Reaction:

    Article Title: Optimized AAV Vector Enables Potent Therapeutic Rescue of Inherited Glycosylphosphatidylinositol Deficiency in Mice
    Article Snippet: Genotyping was performed as described previously; briefly, genomic DNA was extracted from mouse tail biopsies and amplified by polymerase chain reaction (PCR) using PrimeSTAR GXL Premix Fast DNA polymerase (Takara Bio) with the following primers. .. Primer 1: 5′TTGCCACCCTGGAAATGTTG3′ Primer 2: 5′TAGAGGTGTTCCAAGATGCCG3′ Primer 3: 5′CACATTTCCCCGAAAAGTGCCAC3′ PCR products were digested with SalI-HF (New England Biolabs) and separated on a 1% agarose gel. ..

    Agarose Gel Electrophoresis:

    Article Title: Optimized AAV Vector Enables Potent Therapeutic Rescue of Inherited Glycosylphosphatidylinositol Deficiency in Mice
    Article Snippet: Genotyping was performed as described previously; briefly, genomic DNA was extracted from mouse tail biopsies and amplified by polymerase chain reaction (PCR) using PrimeSTAR GXL Premix Fast DNA polymerase (Takara Bio) with the following primers. .. Primer 1: 5′TTGCCACCCTGGAAATGTTG3′ Primer 2: 5′TAGAGGTGTTCCAAGATGCCG3′ Primer 3: 5′CACATTTCCCCGAAAAGTGCCAC3′ PCR products were digested with SalI-HF (New England Biolabs) and separated on a 1% agarose gel. ..



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